Annotation Type List
API endpoint that allows AnnotationTypes to be viewed or edited.
» click to learn about Filtering, Ordering and more...
Accepted filters:
- id: ID (exact)
- created: Created (exact)
- modified: Modified (exact)
- name: Name starts with (istartswith)
- description: Description contains (icontains)
- query: Search filter on the name property (exact)
- owner: Owner Username (exact)
- owned_by: Filter on list of owned by group names [OR] (exact)
- public: Public (exact)
- type: Type (exact)
- label: Label (exact)
- created_by: Created by Username (exact)
- modified_by: Modified by Username (exact)
- model_name: [invalid name] (exact)
- model_type: [invalid name] (exact)
Advanced Filtering
You can also filter using a json object to process all search parameters. Currently this filter supports the syntax as produced/used by the http://summitroute.github.io/react-structured-filter/ search UI.
Example
?query_expression={"category":"name","operator":"contains","value":"Y00"},
{"category":"amount","operator":">","value":"10"},
{"category":"type__name","operator":"exact","value":"ANTIBODY"}
» more info about the query_expression param..
Preset mappings
- created_by: created_by__username
- modified_by: modified_by__username
- owner: owner__username
- owned_by: owned_by__name
- deleted: <function filter_deleted at 0x7f45063765f0>
- deleted_by: deleted_by__username
- notes: notes__content
- cv_category: cv_category__name
- field_meta: field_meta__name
- mandatory_owned_by: mandatory_owned_by__name
- user: user__username
- credential: credential__name
- workflowversion: workflowversion__name
- workflowrun: workflowrun__name
- dataset: dataset__name
Operators
- ==
- =
- >=
- >
- <=
- <
- contains
- icontains
- exact
- iexact
- startswith
- istartswith
- endswith
- iendswith
Permission filtering
Based on the current logged in user you can filter for objects that have a particular permission set:
- can_change: True/False, show objects that you can change
- can_delete: True/False, show objects that you can delete
# not applicable - will raise NotAcceptable:
- can_view: as this is always True, you can only view items you are allowed to see
Ordering
You can order on practically any field even spanning relations.
# reverse order on owner username
?ordering=-owner
# order on related field
?ordering=category__version
API endpoint that allows AnnotationTypes to be viewed or edited.
None
The default modelviewset used in this project
Add JSONPatch like functionality to bulk update items.
### Bulk Delete
This view also allows for one to bulk delete items. The url needs to be appended by ``/bulk_delete/`` and the ids
need to be given by multiple query_params:
```
{current_url}/bulk_delete/?id=<id_1>,id=<id_2>
```
GET /api/v2/annotationtypes/?format=api&ordering=-id
{ "previous": null, "next": "https://labid-demo.embl.de/api/v2/annotationtypes/?format=api&ordering=-id&page=2", "current": 1, "total": 56, "total_pages": 3, "results": [ { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/f9e22fa9-88de-4720-b77f-691d57d66d11/?format=api", "id": "f9e22fa9-88de-4720-b77f-691d57d66d11", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.635920+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.636013+01:00", "category": "property" }, "name": "Antibody", "choice_label": "Antibody", "description": "Applicable for IP based experiments eg ChIP-chip, ChIP-Seq, RNA-IP or variations of these. The antibody used to Immuno-Precipitate the target material (e.g. chromatin). One might want to indicate the titration as well. Please remember that '@' should be avoided. Instead you could use 'vs'", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Antibody", "help_text": "Applicable for IP based experiments eg ChIP-chip, ChIP-Seq, RNA-IP or variations of these. The antibody used to Immuno-Precipitate the target material (e.g. chromatin). One might want to indicate the titration as well. Please remember that '@' should be avoided. Instead you could use 'vs'", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/f602d8c0-a360-4377-8f50-fbf5c92717ef/?format=api", "id": "f602d8c0-a360-4377-8f50-fbf5c92717ef", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:48.009578+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:48.009661+01:00", "category": "property" }, "name": "image_physical_pixel_size_y_micrometer", "choice_label": "Physical Pixel Size Y (µm)", "description": "Physical size of a pixel in Y dimension in micrometers.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Physical Pixel Size Y (µm)", "help_text": "Physical size of a pixel in Y dimension in micrometers.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/f3f7fe94-c1f2-4362-b139-8c0e6160baf3/?format=api", "id": "f3f7fe94-c1f2-4362-b139-8c0e6160baf3", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.691818+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.691953+01:00", "category": "property" }, "name": "CellLine", "choice_label": "CellLine", "description": "MIAME Attribute. The identifier for the established culture of a metazoan cell if one was used as a biomaterial.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "CellLine", "help_text": "MIAME Attribute. The identifier for the established culture of a metazoan cell if one was used as a biomaterial.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/f1c67f3c-b3e3-4956-9e6e-d7b002bf75f5/?format=api", "id": "f1c67f3c-b3e3-4956-9e6e-d7b002bf75f5", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:48.031094+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:48.031175+01:00", "category": "property" }, "name": "image_extracted_metadata_json", "choice_label": "Image Extracted Metadata (JSON)", "description": "JSON object containing image metadata as extracted from the image file. Read-only.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Image Extracted Metadata (JSON)", "help_text": "JSON object containing image metadata as extracted from the image file. Read-only.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/ef89e37a-ab9c-4784-bc77-2c5d767fccd6/?format=api", "id": "ef89e37a-ab9c-4784-bc77-2c5d767fccd6", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.917263+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.917339+01:00", "category": "property" }, "name": "ena_sample_accession", "choice_label": "ENA Sample Acc", "description": "", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "ENA Sample Acc", "help_text": "", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/eb11986d-1a37-4577-8253-9996fde23739/?format=api", "id": "eb11986d-1a37-4577-8253-9996fde23739", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.627751+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.628166+01:00", "category": "property" }, "name": "Age", "choice_label": "Age", "description": "MIAME Attribute. The time period elapsed since an identifiable point in the life cycle of an organism. If a developmental stage is specified, the identifiable point would be the beginning of that stage. Otherwise the identifiable point must be specified such as planting (e.g. 3 days post planting)", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Age", "help_text": "MIAME Attribute. The time period elapsed since an identifiable point in the life cycle of an organism. If a developmental stage is specified, the identifiable point would be the beginning of that stage. Otherwise the identifiable point must be specified such as planting (e.g. 3 days post planting)", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/e631cc25-4c4d-4adf-8415-efc1ed95d633/?format=api", "id": "e631cc25-4c4d-4adf-8415-efc1ed95d633", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.899790+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.899903+01:00", "category": "property" }, "name": "archives", "choice_label": "Archives", "description": "Archives in which related data has been stored.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Archives", "help_text": "Archives in which related data has been stored.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/e591c303-a0ec-4a8d-943d-92d27ba8a034/?format=api", "id": "e591c303-a0ec-4a8d-943d-92d27ba8a034", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.895360+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.895440+01:00", "category": "property" }, "name": "galaxy_annotation_object", "choice_label": "Galaxy Annotation", "description": "Used to store various Galaxy annotations like dataset or workflow ids", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "GALAXYANNOTATION", "label": "Galaxy Annotation", "help_text": "Used to store various Galaxy annotations like dataset or workflow ids", "default": "", "has_default": false, "multiple": true, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "JSON", "preferred_edit_widget": "JSON", "preferred_list_widget": "JSON", "field_meta": "28895e45-3048-4720-9679-20a3d1a06f10", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/e5177f8e-8e3c-4978-af84-2aa88c0ddbfa/?format=api", "id": "e5177f8e-8e3c-4978-af84-2aa88c0ddbfa", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.794251+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.794331+01:00", "category": "property" }, "name": "GeneticModification", "choice_label": "GeneticModification", "description": "MIAME Attribute. Note: use 'IndividualGeneticCharacteristics' to describe the genotype. The genetic modification introduced into the organism from which the biomaterial was derived. Examples of genetic modification include specification of a transgene or the gene knocked-out or details of transient transfection. Values could be one of chromosomal substitution, gene knock in, gene knock out, induced mutation, transfection or other if nothing suits your case.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "VOCABULARYTERM", "label": "GeneticModification", "help_text": "MIAME Attribute. Note: use 'IndividualGeneticCharacteristics' to describe the genotype. The genetic modification introduced into the organism from which the biomaterial was derived. Examples of genetic modification include specification of a transgene or the gene knocked-out or details of transient transfection. Values could be one of chromosomal substitution, gene knock in, gene knock out, induced mutation, transfection or other if nothing suits your case.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": "ac1d9e7c-cb17-42f4-85a7-adb64baaa7ef", "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "label", "choices_api": "https://labid-demo.embl.de/api/v2/vocabularies/terms/?category_id=ac1d9e7c-cb17-42f4-85a7-adb64baaa7ef&fields=id%2Clabel&ordering=name&page_size=20&response_format=flat", "preferred_view_widget": "CVVIEW", "preferred_edit_widget": "CVEDIT", "preferred_list_widget": "CSVTEXT", "field_meta": "ad0a3aab-0680-4e2b-b943-987013ba376b", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/df2e0c4c-8ea0-4691-aedd-9cbbbc345be7/?format=api", "id": "df2e0c4c-8ea0-4691-aedd-9cbbbc345be7", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.731712+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.731787+01:00", "category": "property" }, "name": "TreatmentConcentration", "choice_label": "TreatmentConcentration", "description": "Describes the concentration at which a sample has been treated with a compound indicated in the Treatment annotation. WHENEVER POSSIBLE USE THE SAME concentration UNIT FOR ALL SAMPLES OF THE SAME EXPERIMENT. Values should NOT contain greek letter i.e. please fully spell the concentration unit e.g. microliter.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "TreatmentConcentration", "help_text": "Describes the concentration at which a sample has been treated with a compound indicated in the Treatment annotation. WHENEVER POSSIBLE USE THE SAME concentration UNIT FOR ALL SAMPLES OF THE SAME EXPERIMENT. Values should NOT contain greek letter i.e. please fully spell the concentration unit e.g. microliter.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/ddac7397-892d-4925-a813-137e503dec17/?format=api", "id": "ddac7397-892d-4925-a813-137e503dec17", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.930980+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.931118+01:00", "category": "property" }, "name": "image_magnification", "choice_label": "Magnification", "description": "Magnification used to capture the image, e.g. 40x, 63x, 100x.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Magnification", "help_text": "Magnification used to capture the image, e.g. 40x, 63x, 100x.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/d97ac617-ef77-4d62-b7fc-31ce6d9f3b1b/?format=api", "id": "d97ac617-ef77-4d62-b7fc-31ce6d9f3b1b", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.820800+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.820876+01:00", "category": "property" }, "name": "Compound Dose", "choice_label": "Compound Dose", "description": "Compound Dose.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Compound Dose", "help_text": "Compound Dose.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/d1add532-2957-4229-80bd-ea27fae972c9/?format=api", "id": "d1add532-2957-4229-80bd-ea27fae972c9", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.941190+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.941267+01:00", "category": "property" }, "name": "image_size_x", "choice_label": "Image Size X", "description": "Image width in X dimension (number of pixels).", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Image Size X", "help_text": "Image width in X dimension (number of pixels).", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/cc04552d-eab9-40b5-be8e-44b6c725976f/?format=api", "id": "cc04552d-eab9-40b5-be8e-44b6c725976f", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.829093+01:00", 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