Annotation Type List
API endpoint that allows AnnotationTypes to be viewed or edited.
» click to learn about Filtering, Ordering and more...
Accepted filters:
- id: ID (exact)
- created: Created (exact)
- modified: Modified (exact)
- name: Name starts with (istartswith)
- description: Description contains (icontains)
- query: Search filter on the name property (exact)
- owner: Owner Username (exact)
- owned_by: Filter on list of owned by group names [OR] (exact)
- public: Public (exact)
- type: Type (exact)
- label: Label (exact)
- created_by: Created by Username (exact)
- modified_by: Modified by Username (exact)
- model_name: [invalid name] (exact)
- model_type: [invalid name] (exact)
Advanced Filtering
You can also filter using a json object to process all search parameters. Currently this filter supports the syntax as produced/used by the http://summitroute.github.io/react-structured-filter/ search UI.
Example
?query_expression={"category":"name","operator":"contains","value":"Y00"},
{"category":"amount","operator":">","value":"10"},
{"category":"type__name","operator":"exact","value":"ANTIBODY"}
» more info about the query_expression param..
Preset mappings
- created_by: created_by__username
- modified_by: modified_by__username
- owner: owner__username
- owned_by: owned_by__name
- deleted: <function filter_deleted at 0x7f0bca588c10>
- deleted_by: deleted_by__username
- notes: notes__content
- cv_category: cv_category__name
- field_meta: field_meta__name
- mandatory_owned_by: mandatory_owned_by__name
- user: user__username
- credential: credential__name
- workflowversion: workflowversion__name
- workflowrun: workflowrun__name
- dataset: dataset__name
Operators
- ==
- =
- >=
- >
- <=
- <
- contains
- icontains
- exact
- iexact
- startswith
- istartswith
- endswith
- iendswith
Permission filtering
Based on the current logged in user you can filter for objects that have a particular permission set:
- can_change: True/False, show objects that you can change
- can_delete: True/False, show objects that you can delete
# not applicable - will raise NotAcceptable:
- can_view: as this is always True, you can only view items you are allowed to see
Ordering
You can order on practically any field even spanning relations.
# reverse order on owner username
?ordering=-owner
# order on related field
?ordering=category__version
API endpoint that allows AnnotationTypes to be viewed or edited.
None
The default modelviewset used in this project
Add JSONPatch like functionality to bulk update items.
### Bulk Delete
This view also allows for one to bulk delete items. The url needs to be appended by ``/bulk_delete/`` and the ids
need to be given by multiple query_params:
```
{current_url}/bulk_delete/?id=<id_1>,id=<id_2>
```
GET /api/v2/annotationtypes/?format=api
{ "previous": null, "next": "https://labid-demo.embl.de/api/v2/annotationtypes/?format=api&page=2", "current": 1, "total": 41, "total_pages": 3, "results": [ { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/75f89d29-7bab-4036-83fd-b38f1d2f9b8d/?format=api", "id": "75f89d29-7bab-4036-83fd-b38f1d2f9b8d", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:32:46.102340+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:32:46.102417+01:00", "category": "property" }, "name": "reagent", "choice_label": "Reagent", "description": "", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Reagent", "help_text": "", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "6b636b97-f7c3-43d1-aff2-4304805244ec", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/504738cf-aad6-41df-ab9c-24fae9dc1d31/?format=api", "id": "504738cf-aad6-41df-ab9c-24fae9dc1d31", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:32:46.097222+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:32:46.097301+01:00", "category": "property" }, "name": "flowcell", "choice_label": "FlowCell", "description": "", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "FlowCell", "help_text": "", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "6b636b97-f7c3-43d1-aff2-4304805244ec", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/8fde3702-27c5-48bf-a0e6-62e63d596df0/?format=api", "id": "8fde3702-27c5-48bf-a0e6-62e63d596df0", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:32:46.089876+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:32:46.089958+01:00", "category": "property" }, "name": "experiment_link", "choice_label": "Experiment Link", "description": "A link to an experiment object.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "OBJECT", "label": "Experiment Link", "help_text": "A link to an experiment object.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": "https://labid-demo.embl.de/api/v2/assays/experiments/?fields=id%2Cchoice_label&ordering=name&page_size=20&response_format=flat", "preferred_view_widget": "CSVLINK", "preferred_edit_widget": "SELECT", "preferred_list_widget": "CSVLINK", "field_meta": "7d718aa4-6ae1-43cb-a033-7b375398a11e", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/b3e44314-c63e-46de-8e24-2b338f3958b3/?format=api", "id": "b3e44314-c63e-46de-8e24-2b338f3958b3", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:32:46.059251+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:32:46.059387+01:00", "category": "property" }, "name": "assay_link", "choice_label": "Assay Link", "description": "A link to an assay object.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "OBJECT", "label": "Assay Link", "help_text": "A link to an assay object.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": "https://labid-demo.embl.de/api/v2/assays/assays/?fields=id%2Cchoice_label&ordering=name&page_size=20&response_format=flat", "preferred_view_widget": "CSVLINK", "preferred_edit_widget": "SELECT", "preferred_list_widget": "CSVLINK", "field_meta": "7d718aa4-6ae1-43cb-a033-7b375398a11e", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/37ae54e4-83c4-44fc-9c0b-c4ad17300161/?format=api", "id": "37ae54e4-83c4-44fc-9c0b-c4ad17300161", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:24:48.578607+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:24:48.580905+01:00", "category": "property" }, "name": "dmapp_annotation_object", "choice_label": "DMApp", "description": "Stores various annotations regarding the DMApp.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "DMAPPANNOTATION", "label": "DMApp", "help_text": "Stores various annotations regarding the DMApp.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "ALWAYS", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "JSON", "preferred_edit_widget": "JSON", "preferred_list_widget": "JSON", "field_meta": "e07c188e-7238-4919-a838-0be3701146f3", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/98f6dacf-52af-49bb-b282-d614b7914129/?format=api", "id": "98f6dacf-52af-49bb-b282-d614b7914129", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:12:44.339950+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:12:44.340022+01:00", "category": "property" }, "name": "ena_experiment_accession", "choice_label": "ENA Experiment Acc", "description": "", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "ENA Experiment Acc", "help_text": "", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "6b636b97-f7c3-43d1-aff2-4304805244ec", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/39f64e44-6639-4266-901a-118c8870f9c9/?format=api", "id": "39f64e44-6639-4266-901a-118c8870f9c9", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:12:44.336273+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:12:44.336345+01:00", "category": "property" }, "name": "biosamples_accession", "choice_label": "ENA Biosample Acc", "description": "", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "ENA Biosample Acc", "help_text": "", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "6b636b97-f7c3-43d1-aff2-4304805244ec", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/9ab6a022-b910-43d9-8521-918026645b53/?format=api", "id": "9ab6a022-b910-43d9-8521-918026645b53", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:12:44.332657+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:12:44.332730+01:00", "category": "property" }, "name": "ena_sample_accession", "choice_label": "ENA Sample Acc", "description": "", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "ENA Sample Acc", "help_text": "", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "6b636b97-f7c3-43d1-aff2-4304805244ec", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/c68bd984-dedd-480d-bbc2-ad7bee3acb26/?format=api", "id": "c68bd984-dedd-480d-bbc2-ad7bee3acb26", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:12:44.329040+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:12:44.329112+01:00", "category": "property" }, "name": "ena_run_accession", "choice_label": "ENA Run Acc", "description": "", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "ENA Run Acc", "help_text": "", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "6b636b97-f7c3-43d1-aff2-4304805244ec", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/57bdb359-fad2-4856-8c3a-4f18a679b733/?format=api", "id": "57bdb359-fad2-4856-8c3a-4f18a679b733", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:12:44.325409+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:12:44.325481+01:00", "category": "property" }, "name": "biostudies_accession", "choice_label": "ENA Biostudy Acc", "description": "", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "ENA Biostudy Acc", "help_text": "", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "6b636b97-f7c3-43d1-aff2-4304805244ec", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/ae8da2fc-24a0-4063-a3f7-e8c6388bbdce/?format=api", "id": "ae8da2fc-24a0-4063-a3f7-e8c6388bbdce", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:12:44.321473+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:12:44.321568+01:00", "category": "property" }, "name": "ena_study_accession", "choice_label": "Archives", "description": "Accession number for a study in the ENA", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Archives", "help_text": "Accession number for a study in the ENA", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "6b636b97-f7c3-43d1-aff2-4304805244ec", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/89250d8e-3a00-4308-8735-6156807a1d14/?format=api", "id": "89250d8e-3a00-4308-8735-6156807a1d14", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:12:44.316880+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:12:44.316987+01:00", "category": "property" }, "name": "archives", "choice_label": "Archives", "description": "Archives in which related data has been stored.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Archives", "help_text": "Archives in which related data has been stored.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "6b636b97-f7c3-43d1-aff2-4304805244ec", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/5d2ecf7c-2814-4a5b-b5a2-51baddb1f219/?format=api", "id": "5d2ecf7c-2814-4a5b-b5a2-51baddb1f219", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:12:44.312983+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:12:44.313057+01:00", "category": "property" }, "name": "galaxy_annotation_object", "choice_label": "Galaxy Annotation", "description": "Used to store various Galaxy annotations like dataset or workflow ids", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "GALAXYANNOTATION", "label": "Galaxy Annotation", "help_text": "Used to store various Galaxy annotations like dataset or workflow ids", "default": "", "has_default": false, "multiple": true, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "JSON", "preferred_edit_widget": "JSON", "preferred_list_widget": "JSON", "field_meta": "e07c188e-7238-4919-a838-0be3701146f3", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/0ac7f071-11ed-462c-b80c-7ea1d37823b8/?format=api", "id": "0ac7f071-11ed-462c-b80c-7ea1d37823b8", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-08T16:12:44.309212+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-08T16:12:44.309285+01:00", "category": "property" }, "name": "Temperature", "choice_label": "Temperature", "description": "Temperature.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": 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