Annotation Type List
API endpoint that allows AnnotationTypes to be viewed or edited.
» click to learn about Filtering, Ordering and more...
Accepted filters:
- id: ID (exact)
- created: Created (exact)
- modified: Modified (exact)
- name: Name starts with (istartswith)
- description: Description contains (icontains)
- query: Search filter on the name property (exact)
- owner: Owner Username (exact)
- owned_by: Filter on list of owned by group names [OR] (exact)
- public: Public (exact)
- type: Type (exact)
- label: Label (exact)
- created_by: Created by Username (exact)
- modified_by: Modified by Username (exact)
- model_name: [invalid name] (exact)
- model_type: [invalid name] (exact)
Advanced Filtering
You can also filter using a json object to process all search parameters. Currently this filter supports the syntax as produced/used by the http://summitroute.github.io/react-structured-filter/ search UI.
Example
?query_expression={"category":"name","operator":"contains","value":"Y00"},
{"category":"amount","operator":">","value":"10"},
{"category":"type__name","operator":"exact","value":"ANTIBODY"}
» more info about the query_expression param..
Preset mappings
- created_by: created_by__username
- modified_by: modified_by__username
- owner: owner__username
- owned_by: owned_by__name
- deleted: <function filter_deleted at 0x7f45063b6710>
- deleted_by: deleted_by__username
- notes: notes__content
- cv_category: cv_category__name
- field_meta: field_meta__name
- mandatory_owned_by: mandatory_owned_by__name
- user: user__username
- credential: credential__name
- workflowversion: workflowversion__name
- workflowrun: workflowrun__name
- dataset: dataset__name
Operators
- ==
- =
- >=
- >
- <=
- <
- contains
- icontains
- exact
- iexact
- startswith
- istartswith
- endswith
- iendswith
Permission filtering
Based on the current logged in user you can filter for objects that have a particular permission set:
- can_change: True/False, show objects that you can change
- can_delete: True/False, show objects that you can delete
# not applicable - will raise NotAcceptable:
- can_view: as this is always True, you can only view items you are allowed to see
Ordering
You can order on practically any field even spanning relations.
# reverse order on owner username
?ordering=-owner
# order on related field
?ordering=category__version
API endpoint that allows AnnotationTypes to be viewed or edited.
None
The default modelviewset used in this project
Add JSONPatch like functionality to bulk update items.
### Bulk Delete
This view also allows for one to bulk delete items. The url needs to be appended by ``/bulk_delete/`` and the ids
need to be given by multiple query_params:
```
{current_url}/bulk_delete/?id=<id_1>,id=<id_2>
```
GET /api/v2/annotationtypes/?format=api&ordering=name
{ "previous": null, "next": "https://labid-demo.embl.de/api/v2/annotationtypes/?format=api&ordering=name&page=2", "current": 1, "total": 56, "total_pages": 3, "results": [ { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/eb11986d-1a37-4577-8253-9996fde23739/?format=api", "id": "eb11986d-1a37-4577-8253-9996fde23739", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.627751+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.628166+01:00", "category": "property" }, "name": "Age", "choice_label": "Age", "description": "MIAME Attribute. The time period elapsed since an identifiable point in the life cycle of an organism. If a developmental stage is specified, the identifiable point would be the beginning of that stage. Otherwise the identifiable point must be specified such as planting (e.g. 3 days post planting)", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Age", "help_text": "MIAME Attribute. The time period elapsed since an identifiable point in the life cycle of an organism. If a developmental stage is specified, the identifiable point would be the beginning of that stage. Otherwise the identifiable point must be specified such as planting (e.g. 3 days post planting)", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/f9e22fa9-88de-4720-b77f-691d57d66d11/?format=api", "id": "f9e22fa9-88de-4720-b77f-691d57d66d11", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.635920+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.636013+01:00", "category": "property" }, "name": "Antibody", "choice_label": "Antibody", "description": "Applicable for IP based experiments eg ChIP-chip, ChIP-Seq, RNA-IP or variations of these. The antibody used to Immuno-Precipitate the target material (e.g. chromatin). One might want to indicate the titration as well. Please remember that '@' should be avoided. Instead you could use 'vs'", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Antibody", "help_text": "Applicable for IP based experiments eg ChIP-chip, ChIP-Seq, RNA-IP or variations of these. The antibody used to Immuno-Precipitate the target material (e.g. chromatin). One might want to indicate the titration as well. Please remember that '@' should be avoided. Instead you could use 'vs'", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/394b1604-fdad-48eb-b5af-36e0b77692ee/?format=api", "id": "394b1604-fdad-48eb-b5af-36e0b77692ee", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.685274+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.685427+01:00", "category": "property" }, "name": "Antibody Source", "choice_label": "Antibody Source", "description": "Animal name/code/id used to produce antibody. Could be lot number, animal name, ..", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Antibody Source", "help_text": "Animal name/code/id used to produce antibody. Could be lot number, animal name, ..", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/2053c268-8524-4337-8061-18c0d9b004f0/?format=api", "id": "2053c268-8524-4337-8061-18c0d9b004f0", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.787961+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.788068+01:00", "category": "property" }, "name": "AntibodyType", "choice_label": "AntibodyType", "description": "The general type of an antibody i.e. monoclonal, serum, polyclonal, ...", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "VOCABULARYTERM", "label": "AntibodyType", "help_text": "The general type of an antibody i.e. monoclonal, serum, polyclonal, ...", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": "3f97b971-2027-466d-abe2-ac1f7573faa9", "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "label", "choices_api": "https://labid-demo.embl.de/api/v2/vocabularies/terms/?category_id=3f97b971-2027-466d-abe2-ac1f7573faa9&fields=id%2Clabel&ordering=name&page_size=20&response_format=flat", "preferred_view_widget": "CVVIEW", "preferred_edit_widget": "CVEDIT", "preferred_list_widget": "CSVTEXT", "field_meta": "ad0a3aab-0680-4e2b-b943-987013ba376b", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/e631cc25-4c4d-4adf-8415-efc1ed95d633/?format=api", "id": "e631cc25-4c4d-4adf-8415-efc1ed95d633", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.899790+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.899903+01:00", "category": "property" }, "name": "archives", "choice_label": "Archives", "description": "Archives in which related data has been stored.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Archives", "help_text": "Archives in which related data has been stored.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/5ef177e0-aadb-4b84-aedb-70c3f333255b/?format=api", "id": "5ef177e0-aadb-4b84-aedb-70c3f333255b", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:31:45.292883+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:31:45.292991+01:00", "category": "property" }, "name": "assay_link", "choice_label": "Assay Link", "description": "A link to an assay object.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "OBJECT", "label": "Assay Link", "help_text": "A link to an assay object.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": "https://labid-demo.embl.de/api/v2/assays/assays/?fields=id%2Cchoice_label&ordering=name&page_size=20&response_format=flat", "preferred_view_widget": "CSVLINK", "preferred_edit_widget": "SELECT", "preferred_list_widget": "CSVLINK", "field_meta": "f5cee1da-52a3-4752-929d-f0bc8baefdfb", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/11ab6fda-c7ad-4c3a-821d-0063cec1b3bd/?format=api", "id": "11ab6fda-c7ad-4c3a-821d-0063cec1b3bd", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.922223+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.922316+01:00", "category": "property" }, "name": "biosamples_accession", "choice_label": "ENA Biosample Acc", "description": "", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "ENA Biosample Acc", "help_text": "", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/10868efa-a16d-4453-be51-3d44e89ae25d/?format=api", "id": "10868efa-a16d-4453-be51-3d44e89ae25d", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.908822+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.908898+01:00", "category": "property" }, "name": "biostudies_accession", "choice_label": "ENA Biostudy Acc", "description": "", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "ENA Biostudy Acc", "help_text": "", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/f3f7fe94-c1f2-4362-b139-8c0e6160baf3/?format=api", "id": "f3f7fe94-c1f2-4362-b139-8c0e6160baf3", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.691818+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.691953+01:00", "category": "property" }, "name": "CellLine", "choice_label": "CellLine", "description": "MIAME Attribute. The identifier for the established culture of a metazoan cell if one was used as a biomaterial.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "CellLine", "help_text": "MIAME Attribute. The identifier for the established culture of a metazoan cell if one was used as a biomaterial.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/17c42974-d74c-4c48-9806-3b9efdbe04af/?format=api", "id": "17c42974-d74c-4c48-9806-3b9efdbe04af", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.696530+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.696624+01:00", "category": "property" }, "name": "CellType", "choice_label": "CellType", "description": "MIAME Attribute. The type of cell used in the experiment ; example of instances, epithelial, glial etc.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "CellType", "help_text": "MIAME Attribute. The type of cell used in the experiment ; example of instances, epithelial, glial etc.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/a358c393-a68a-4f7b-88dd-c83ed68719a9/?format=api", "id": "a358c393-a68a-4f7b-88dd-c83ed68719a9", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.701120+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.701198+01:00", "category": "property" }, "name": "Compound", "choice_label": "Compound", "description": "A drug, solvent, chemical, etc., with a property that can be measured such as concentration. Example of use: sample treatment with a drug.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Compound", "help_text": "A drug, solvent, chemical, etc., with a property that can be measured such as concentration. Example of use: sample treatment with a drug.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/d97ac617-ef77-4d62-b7fc-31ce6d9f3b1b/?format=api", "id": "d97ac617-ef77-4d62-b7fc-31ce6d9f3b1b", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.820800+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.820876+01:00", "category": "property" }, "name": "Compound Dose", "choice_label": "Compound Dose", "description": "Compound Dose.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Compound Dose", "help_text": "Compound Dose.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/7d6d8a82-1e33-46b0-81d3-d12a9069cac8/?format=api", "id": "7d6d8a82-1e33-46b0-81d3-d12a9069cac8", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.705727+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.705803+01:00", "category": "property" }, "name": "DevelopmentalStage", "choice_label": "DevelopmentalStage", "description": "MIAME Attribute. The developmental stage of the organism's life cycle during which the biomaterial was extracted.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "DevelopmentalStage", "help_text": "MIAME Attribute. 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The name of the pathology diagnosed in the organism from which the biomaterial was derived. The disease state is normal if no disease has been diagnosed.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "DiseaseState", "help_text": "MIAME Attribute. The name of the pathology diagnosed in the organism from which the biomaterial was derived. 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