Annotation Type List
API endpoint that allows AnnotationTypes to be viewed or edited.
» click to learn about Filtering, Ordering and more...
Accepted filters:
- id: ID (exact)
- created: Created (exact)
- modified: Modified (exact)
- name: Name starts with (istartswith)
- description: Description contains (icontains)
- query: Search filter on the name property (exact)
- owner: Owner Username (exact)
- owned_by: Filter on list of owned by group names [OR] (exact)
- public: Public (exact)
- type: Type (exact)
- label: Label (exact)
- created_by: Created by Username (exact)
- modified_by: Modified by Username (exact)
- model_name: [invalid name] (exact)
- model_type: [invalid name] (exact)
Advanced Filtering
You can also filter using a json object to process all search parameters. Currently this filter supports the syntax as produced/used by the http://summitroute.github.io/react-structured-filter/ search UI.
Example
?query_expression={"category":"name","operator":"contains","value":"Y00"},
{"category":"amount","operator":">","value":"10"},
{"category":"type__name","operator":"exact","value":"ANTIBODY"}
» more info about the query_expression param..
Preset mappings
- created_by: created_by__username
- modified_by: modified_by__username
- owner: owner__username
- owned_by: owned_by__name
- deleted: <function filter_deleted at 0x7f45063b6710>
- deleted_by: deleted_by__username
- notes: notes__content
- cv_category: cv_category__name
- field_meta: field_meta__name
- mandatory_owned_by: mandatory_owned_by__name
- user: user__username
- credential: credential__name
- workflowversion: workflowversion__name
- workflowrun: workflowrun__name
- dataset: dataset__name
Operators
- ==
- =
- >=
- >
- <=
- <
- contains
- icontains
- exact
- iexact
- startswith
- istartswith
- endswith
- iendswith
Permission filtering
Based on the current logged in user you can filter for objects that have a particular permission set:
- can_change: True/False, show objects that you can change
- can_delete: True/False, show objects that you can delete
# not applicable - will raise NotAcceptable:
- can_view: as this is always True, you can only view items you are allowed to see
Ordering
You can order on practically any field even spanning relations.
# reverse order on owner username
?ordering=-owner
# order on related field
?ordering=category__version
API endpoint that allows AnnotationTypes to be viewed or edited.
None
The default modelviewset used in this project
Add JSONPatch like functionality to bulk update items.
### Bulk Delete
This view also allows for one to bulk delete items. The url needs to be appended by ``/bulk_delete/`` and the ids
need to be given by multiple query_params:
```
{current_url}/bulk_delete/?id=<id_1>,id=<id_2>
```
GET /api/v2/annotationtypes/?format=api&ordering=id
{ "previous": null, "next": "https://labid-demo.embl.de/api/v2/annotationtypes/?format=api&ordering=id&page=2", "current": 1, "total": 56, "total_pages": 3, "results": [ { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/0a74b33a-68c9-4031-b6db-418bbf4d1468/?format=api", "id": "0a74b33a-68c9-4031-b6db-418bbf4d1468", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.727559+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.727655+01:00", "category": "property" }, "name": "pubmed_id", "choice_label": "Pubmed ID", "description": "Pubmed identifiers.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Pubmed ID", "help_text": "Pubmed identifiers.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "PubmedID", "preferred_edit_widget": "PubmedID", "preferred_list_widget": "PubmedID", "field_meta": "cf026ba6-30d1-41f3-9e43-ae2c402b46a4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/107088eb-8a09-4e03-ad92-d47f96bdd8f0/?format=api", "id": "107088eb-8a09-4e03-ad92-d47f96bdd8f0", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.936511+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.936638+01:00", "category": "property" }, "name": "image_dimension_order", "choice_label": "Image Dimension Order", "description": "Dimension order of the image, e.g. XYZCT, TCZYX.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Image Dimension Order", "help_text": "Dimension order of the image, e.g. XYZCT, TCZYX.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/10868efa-a16d-4453-be51-3d44e89ae25d/?format=api", "id": "10868efa-a16d-4453-be51-3d44e89ae25d", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.908822+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.908898+01:00", "category": "property" }, "name": "biostudies_accession", "choice_label": "ENA Biostudy Acc", "description": "", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "ENA Biostudy Acc", "help_text": "", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/109180c2-a9ba-48c1-b470-a253825f6af0/?format=api", "id": "109180c2-a9ba-48c1-b470-a253825f6af0", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.719020+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.719113+01:00", "category": "property" }, "name": "OrganismPart", "choice_label": "OrganismPart", "description": "MIAME Attribute. The part of organism's anatomy or substance arising from an organism from which the biomaterial was derived, excludes cells. E.g. tissue, organ, system, sperm, blood or body location (arm).", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "OrganismPart", "help_text": "MIAME Attribute. The part of organism's anatomy or substance arising from an organism from which the biomaterial was derived, excludes cells. E.g. tissue, organ, system, sperm, blood or body location (arm).", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/10ce49f9-cbfa-4286-bf1b-c773fa90bbe0/?format=api", "id": "10ce49f9-cbfa-4286-bf1b-c773fa90bbe0", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.987769+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.988000+01:00", "category": "property" }, "name": "image_size_y", "choice_label": "Image Size Y", "description": "Image height in Y dimension (number of pixels).", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Image Size Y", "help_text": "Image height in Y dimension (number of pixels).", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/11ab6fda-c7ad-4c3a-821d-0063cec1b3bd/?format=api", "id": "11ab6fda-c7ad-4c3a-821d-0063cec1b3bd", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.922223+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.922316+01:00", "category": "property" }, "name": "biosamples_accession", "choice_label": "ENA Biosample Acc", "description": "", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "ENA Biosample Acc", "help_text": "", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/164b84e8-8a73-472f-931b-036a9be5684f/?format=api", "id": "164b84e8-8a73-472f-931b-036a9be5684f", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:31:45.307430+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:31:45.307508+01:00", "category": "property" }, "name": "experiment_link", "choice_label": "Experiment Link", "description": "A link to an experiment object.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "OBJECT", "label": "Experiment Link", "help_text": "A link to an experiment object.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": "https://labid-demo.embl.de/api/v2/assays/experiments/?fields=id%2Cchoice_label&ordering=name&page_size=20&response_format=flat", "preferred_view_widget": "CSVLINK", "preferred_edit_widget": "SELECT", "preferred_list_widget": "CSVLINK", "field_meta": "f5cee1da-52a3-4752-929d-f0bc8baefdfb", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/17a193fe-33e3-42a7-b599-690157bf4ffc/?format=api", "id": "17a193fe-33e3-42a7-b599-690157bf4ffc", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:48.001456+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:48.001556+01:00", "category": "property" }, "name": "image_size_time", "choice_label": "Image Time Points", "description": "Size of the image in Time dimension (number of time points).", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Image Time Points", "help_text": "Size of the image in Time dimension (number of time points).", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/17c42974-d74c-4c48-9806-3b9efdbe04af/?format=api", "id": "17c42974-d74c-4c48-9806-3b9efdbe04af", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.696530+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.696624+01:00", "category": "property" }, "name": "CellType", "choice_label": "CellType", "description": "MIAME Attribute. The type of cell used in the experiment ; example of instances, epithelial, glial etc.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "CellType", "help_text": "MIAME Attribute. The type of cell used in the experiment ; example of instances, epithelial, glial etc.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/1d696af2-1480-4437-8d49-a01ca0217529/?format=api", "id": "1d696af2-1480-4437-8d49-a01ca0217529", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.735882+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.735956+01:00", "category": "property" }, "name": "TreatmentTime", "choice_label": "TreatmentTime", "description": "Describes the time a sample has been treated with a compound. WHENEVER POSSIBLE USE THE SAME TIME UNIT FOR ALL SAMPLES OF THE SAME EXPERIMENT. Values should be like: 3 hours, 30 minutes or 2 days. Allowed time units are: years, months, weeks, days, hours, minutes, seconds, ms, us. Note that following synonyms are also allowed: m, d and h for months, days and hours, respectively.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "TreatmentTime", "help_text": "Describes the time a sample has been treated with a compound. WHENEVER POSSIBLE USE THE SAME TIME UNIT FOR ALL SAMPLES OF THE SAME EXPERIMENT. Values should be like: 3 hours, 30 minutes or 2 days. Allowed time units are: years, months, weeks, days, hours, minutes, seconds, ms, us. Note that following synonyms are also allowed: m, d and h for months, days and hours, respectively.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/1de458f5-0e69-4293-a04c-ed97f5cbf5d4/?format=api", "id": "1de458f5-0e69-4293-a04c-ed97f5cbf5d4", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.824874+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.824949+01:00", "category": "property" }, "name": "Epitope", "choice_label": "Epitope", "description": "Epitope.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Epitope", "help_text": "Epitope.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/2053c268-8524-4337-8061-18c0d9b004f0/?format=api", "id": "2053c268-8524-4337-8061-18c0d9b004f0", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.787961+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.788068+01:00", "category": "property" }, "name": "AntibodyType", "choice_label": "AntibodyType", "description": "The general type of an antibody i.e. monoclonal, serum, polyclonal, ...", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "VOCABULARYTERM", "label": "AntibodyType", "help_text": "The general type of an antibody i.e. monoclonal, serum, polyclonal, ...", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": "3f97b971-2027-466d-abe2-ac1f7573faa9", "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "label", "choices_api": "https://labid-demo.embl.de/api/v2/vocabularies/terms/?category_id=3f97b971-2027-466d-abe2-ac1f7573faa9&fields=id%2Clabel&ordering=name&page_size=20&response_format=flat", "preferred_view_widget": "CVVIEW", "preferred_edit_widget": "CVEDIT", "preferred_list_widget": "CSVTEXT", "field_meta": "ad0a3aab-0680-4e2b-b943-987013ba376b", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/2f76abf3-4b70-492c-ba96-1b4c862c9992/?format=api", "id": "2f76abf3-4b70-492c-ba96-1b4c862c9992", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.890392+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.890504+01:00", "category": "property" }, "name": "Temperature", "choice_label": "Temperature", "description": "Temperature.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Temperature", "help_text": "Temperature.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/303200b9-ded2-4d64-8840-3130dbe3298b/?format=api", "id": "303200b9-ded2-4d64-8840-3130dbe3298b", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.740184+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.740259+01:00", "category": "property" }, "name": "TreatmentType", "choice_label": "TreatmentType", "description": "The treatment name that samples have been submitted to. A treatment time can be specified using the Treatment Time Annotation.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "TreatmentType", "help_text": "The treatment name that samples have been submitted to. 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