Annotation Type List
API endpoint that allows AnnotationTypes to be viewed or edited.
» click to learn about Filtering, Ordering and more...
Accepted filters:
- id: ID (exact)
- created: Created (exact)
- modified: Modified (exact)
- name: Name starts with (istartswith)
- description: Description contains (icontains)
- query: Search filter on the name property (exact)
- owner: Owner Username (exact)
- owned_by: Filter on list of owned by group names [OR] (exact)
- public: Public (exact)
- type: Type (exact)
- label: Label (exact)
- created_by: Created by Username (exact)
- modified_by: Modified by Username (exact)
- model_name: [invalid name] (exact)
- model_type: [invalid name] (exact)
Advanced Filtering
You can also filter using a json object to process all search parameters. Currently this filter supports the syntax as produced/used by the http://summitroute.github.io/react-structured-filter/ search UI.
Example
?query_expression={"category":"name","operator":"contains","value":"Y00"},
{"category":"amount","operator":">","value":"10"},
{"category":"type__name","operator":"exact","value":"ANTIBODY"}
» more info about the query_expression param..
Preset mappings
- created_by: created_by__username
- modified_by: modified_by__username
- owner: owner__username
- owned_by: owned_by__name
- deleted: <function filter_deleted at 0x7f45063765f0>
- deleted_by: deleted_by__username
- notes: notes__content
- cv_category: cv_category__name
- field_meta: field_meta__name
- mandatory_owned_by: mandatory_owned_by__name
- user: user__username
- credential: credential__name
- workflowversion: workflowversion__name
- workflowrun: workflowrun__name
- dataset: dataset__name
Operators
- ==
- =
- >=
- >
- <=
- <
- contains
- icontains
- exact
- iexact
- startswith
- istartswith
- endswith
- iendswith
Permission filtering
Based on the current logged in user you can filter for objects that have a particular permission set:
- can_change: True/False, show objects that you can change
- can_delete: True/False, show objects that you can delete
# not applicable - will raise NotAcceptable:
- can_view: as this is always True, you can only view items you are allowed to see
Ordering
You can order on practically any field even spanning relations.
# reverse order on owner username
?ordering=-owner
# order on related field
?ordering=category__version
API endpoint that allows AnnotationTypes to be viewed or edited.
None
The default modelviewset used in this project
Add JSONPatch like functionality to bulk update items.
### Bulk Delete
This view also allows for one to bulk delete items. The url needs to be appended by ``/bulk_delete/`` and the ids
need to be given by multiple query_params:
```
{current_url}/bulk_delete/?id=<id_1>,id=<id_2>
```
GET /api/v2/annotationtypes/?format=api&ordering=-description
{ "previous": null, "next": "https://labid-demo.embl.de/api/v2/annotationtypes/?format=api&ordering=-description&page=2", "current": 1, "total": 56, "total_pages": 3, "results": [ { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/38906615-a647-4807-834c-680a6a374d57/?format=api", "id": "38906615-a647-4807-834c-680a6a374d57", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:48.035285+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:48.035363+01:00", "category": "property" }, "name": "ome_metadata_xml", "choice_label": "Extracted OME Metadata", "description": "XML string containing the OME metadata as extracted from the image file. Read-only.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "JSON", "label": "Extracted OME Metadata", "help_text": "XML string containing the OME metadata as extracted from the image file. Read-only.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/e591c303-a0ec-4a8d-943d-92d27ba8a034/?format=api", "id": "e591c303-a0ec-4a8d-943d-92d27ba8a034", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.895360+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.895440+01:00", "category": "property" }, "name": "galaxy_annotation_object", "choice_label": "Galaxy Annotation", "description": "Used to store various Galaxy annotations like dataset or workflow ids", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "GALAXYANNOTATION", "label": "Galaxy Annotation", "help_text": "Used to store various Galaxy annotations like dataset or workflow ids", "default": "", "has_default": false, "multiple": true, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "JSON", "preferred_edit_widget": "JSON", "preferred_list_widget": "JSON", "field_meta": "28895e45-3048-4720-9679-20a3d1a06f10", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/a98adc00-5f4e-4374-86fe-2e123c89729b/?format=api", "id": "a98adc00-5f4e-4374-86fe-2e123c89729b", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:48.017546+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:48.017636+01:00", "category": "property" }, "name": "image_time_increment_second", "choice_label": "Time Increment (second)", "description": "TimeIncrement is used for time series that have a global timing specification instead of per-timepoint timing info. For example in a video stream. The unit default is in seconds.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Time Increment (second)", "help_text": "TimeIncrement is used for time series that have a global timing specification instead of per-timepoint timing info. For example in a video stream. The unit default is in seconds.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/303200b9-ded2-4d64-8840-3130dbe3298b/?format=api", "id": "303200b9-ded2-4d64-8840-3130dbe3298b", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.740184+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.740259+01:00", "category": "property" }, "name": "TreatmentType", "choice_label": "TreatmentType", "description": "The treatment name that samples have been submitted to. A treatment time can be specified using the Treatment Time Annotation.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "TreatmentType", "help_text": "The treatment name that samples have been submitted to. A treatment time can be specified using the Treatment Time Annotation.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/54d2f1bf-245f-4907-9f69-b01fbbb77e85/?format=api", "id": "54d2f1bf-245f-4907-9f69-b01fbbb77e85", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.844634+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.844766+01:00", "category": "property" }, "name": "Organism", "choice_label": "Organism", "description": "The organism.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "VOCABULARYTERM", "label": "Organism", "help_text": "The organism.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": "ecb49b95-a517-4019-884f-d9736d9583f4", "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "label", "choices_api": "https://labid-demo.embl.de/api/v2/vocabularies/terms/?category_id=ecb49b95-a517-4019-884f-d9736d9583f4&fields=id%2Clabel&ordering=name&page_size=20&response_format=flat", "preferred_view_widget": "CVVIEW", "preferred_edit_widget": "CVEDIT", "preferred_list_widget": "CSVTEXT", "field_meta": "ad0a3aab-0680-4e2b-b943-987013ba376b", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/53ba3110-e1de-4989-8911-4c6b94ae800c/?format=api", "id": "53ba3110-e1de-4989-8911-4c6b94ae800c", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.723325+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.723400+01:00", "category": "property" }, "name": "Phenotype", "choice_label": "Phenotype", "description": "The observable form taken by some character (or group of characters) in an individual or an organism, excluding pathology and disease. The detectable outward manifestations of a specific genotype.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Phenotype", "help_text": "The observable form taken by some character (or group of characters) in an individual or an organism, excluding pathology and disease. The detectable outward manifestations of a specific genotype.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/2053c268-8524-4337-8061-18c0d9b004f0/?format=api", "id": "2053c268-8524-4337-8061-18c0d9b004f0", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.787961+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.788068+01:00", "category": "property" }, "name": "AntibodyType", "choice_label": "AntibodyType", "description": "The general type of an antibody i.e. monoclonal, serum, polyclonal, ...", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "VOCABULARYTERM", "label": "AntibodyType", "help_text": "The general type of an antibody i.e. monoclonal, serum, polyclonal, ...", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": "3f97b971-2027-466d-abe2-ac1f7573faa9", "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "label", "choices_api": "https://labid-demo.embl.de/api/v2/vocabularies/terms/?category_id=3f97b971-2027-466d-abe2-ac1f7573faa9&fields=id%2Clabel&ordering=name&page_size=20&response_format=flat", "preferred_view_widget": "CVVIEW", "preferred_edit_widget": "CVEDIT", "preferred_list_widget": "CSVTEXT", "field_meta": "ad0a3aab-0680-4e2b-b943-987013ba376b", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/2f76abf3-4b70-492c-ba96-1b4c862c9992/?format=api", "id": "2f76abf3-4b70-492c-ba96-1b4c862c9992", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.890392+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.890504+01:00", "category": "property" }, "name": "Temperature", "choice_label": "Temperature", "description": "Temperature.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Temperature", "help_text": "Temperature.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/9bf81842-4ec6-4848-b5dd-05547bbcaebd/?format=api", "id": "9bf81842-4ec6-4848-b5dd-05547bbcaebd", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.833103+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.833178+01:00", "category": "property" }, "name": "StrainOrLine", "choice_label": "StrainOrLine", "description": "StrainOrLine.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "StrainOrLine", "help_text": "StrainOrLine.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/c22a9617-7a07-4301-8254-4952adf8fb93/?format=api", "id": "c22a9617-7a07-4301-8254-4952adf8fb93", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:23:58.757012+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:23:58.759324+01:00", "category": "property" }, "name": "dmapp_annotation_object", "choice_label": "DMApp", "description": "Stores various annotations regarding the DMApp.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "DMAPPANNOTATION", "label": "DMApp", "help_text": "Stores various annotations regarding the DMApp.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "ALWAYS", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "JSON", "preferred_edit_widget": "JSON", "preferred_list_widget": "JSON", "field_meta": "28895e45-3048-4720-9679-20a3d1a06f10", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/5105d178-9ade-4b36-89ac-9f99769454a6/?format=api", "id": "5105d178-9ade-4b36-89ac-9f99769454a6", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.993075+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.993213+01:00", "category": "property" }, "name": "image_size_z", "choice_label": "Image Size Z", "description": "Size of the image in Z dimension (number of slices).", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Image Size Z", "help_text": "Size of the image in Z dimension (number of slices).", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/17a193fe-33e3-42a7-b599-690157bf4ffc/?format=api", "id": "17a193fe-33e3-42a7-b599-690157bf4ffc", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:48.001456+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:48.001556+01:00", "category": "property" }, "name": "image_size_time", "choice_label": "Image Time Points", "description": "Size of the image in Time dimension (number of time points).", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "Image Time Points", "help_text": "Size of the image in Time dimension (number of time points).", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": "ALWAYS", "list_visibility": "OPTIONAL", "value_choices": null, "choices_value": "id", "choices_label": "name", "choices_api": null, "preferred_view_widget": "TEXT", "preferred_edit_widget": "TEXTINPUT", "preferred_list_widget": "TEXT", "field_meta": "ca1f6072-9c3a-4b1c-8e1c-14e53370e4f4", "owner": "admin", "owned_by": "SYSTEM_GROUP" }, { "url": "https://labid-demo.embl.de/api/v2/annotationtypes/4ec6e7fd-9ab1-45d1-9329-b3730b7f8a86/?format=api", "id": "4ec6e7fd-9ab1-45d1-9329-b3730b7f8a86", "created_by": "admin", "modified_by": "admin", "created": { "name": "created", "value": "2025-12-16T09:11:47.816452+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.816528+01:00", "category": "property" }, "name": "readtype", "choice_label": "ReadType", "description": "Readtype.", "public": true, "permissions": { "public": true, "actions": {} }, "unit_choices_api": null, "type": "TEXT", "label": "ReadType", "help_text": "Readtype.", "default": "", "has_default": false, "multiple": false, "is_protocol_parameter": false, "autocomplete": "", "searchable": true, "readonly": false, "sortable": true, "cv_category": null, "mandatory": false, "validations": [], "visibility": "ALWAYS", "edit_visibility": 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