Term List
API endpoint that allows CV Terms to be viewed or edited.
» click to learn about Filtering, Ordering and more...
Accepted filters:
- search: Search in the following fields: ^name, ^description. (^startswith, $regex, =exact)
- id: ID (exact)
- created: Created (exact)
- modified: Modified (exact)
- name: Name starts with (istartswith)
- description: Description contains (icontains)
- query: Search filter on the name property (exact)
- owner: Owner Username (exact)
- owned_by: Filter on list of owned by group names [OR] (exact)
- public: Public (exact)
- deleted: Deleted (exact)
- deleted_by: Deleted by (exact)
- deleted_date: Deleted date (exact)
- default: Default (exact)
- category__name: Category Name (exact)
- category__id: Category ID (exact)
- created_by: Created by Username (exact)
- modified_by: Modified by Username (exact)
- dbxref_id: DBXRef ID (exact)
- category_name: Filter on category name (exact)
- category: Filter by category id (exact)
- category_id: Filter by category id (exact)
- category_id_list: Filter on list of category ids [OR] (exact)
- category_name_list: Filter on list of category names [OR] (exact)
» more..
- property: A property for which we need to retrieve the available terms, can be a name or uuid
- dependencies: a json dict that has the values for the properties the given property depends on:
{"chemical_risk_code": "R1", "<uuid>": "H1"}
- intersect: default False, Intersect on the given filter values instead of doing a "ANY" lookup
- scope(_id): (multiple) name or uuid of one or more Scopes.
- scope_tag(_id): (multiple) name or uuid of one or more Scope Tags.
Multiple scopes or scope tags are given like so: scope=Scope1&scope=Scope2
Advanced Filtering
You can also filter using a json object to process all search parameters. Currently this filter supports the syntax as produced/used by the http://summitroute.github.io/react-structured-filter/ search UI.
Example
?query_expression={"category":"name","operator":"contains","value":"Y00"},
{"category":"amount","operator":">","value":"10"},
{"category":"type__name","operator":"exact","value":"ANTIBODY"}
» more info about the query_expression param..
Preset mappings
- category: category__name
- deleted: <function filter_deleted at 0x7f45063b6710>
- deleted_by: deleted_by__username
- owner: owner__username
- owned_by: owned_by__name
- created_by: created_by__username
- modified_by: modified_by__username
Operators
- ==
- =
- >=
- >
- <=
- <
- contains
- icontains
- exact
- iexact
- startswith
- istartswith
- endswith
- iendswith
Permission filtering
Based on the current logged in user you can filter for objects that have a particular permission set:
- can_change: True/False, show objects that you can change
- can_delete: True/False, show objects that you can delete
# not applicable - will raise NotAcceptable:
- can_view: as this is always True, you can only view items you are allowed to see
Ordering
You can order on practically any field even spanning relations.
# reverse order on owner username
?ordering=-owner
# order on related field
?ordering=category__version
API endpoint that allows CV Terms to be viewed or edited.
<details>
<summary>
<i> » click to learn about Filtering, Ordering and more...</i>
</summary>
<details>
<summary> » more..</summary>
```
- property: A property for which we need to retrieve the available terms, can be a name or uuid
- dependencies: a json dict that has the values for the properties the given property depends on:
{"chemical_risk_code": "R1", "<uuid>": "H1"}
- intersect: default False, Intersect on the given filter values instead of doing a "ANY" lookup
- scope(_id): (multiple) name or uuid of one or more Scopes.
- scope_tag(_id): (multiple) name or uuid of one or more Scope Tags.
Multiple scopes or scope tags are given like so: scope=Scope1&scope=Scope2
```
</details>
</details>
None
The default modelviewset used in this project
Add JSONPatch like functionality to bulk update items.
### Bulk Delete
This view also allows for one to bulk delete items. The url needs to be appended by ``/bulk_delete/`` and the ids
need to be given by multiple query_params:
```
{current_url}/bulk_delete/?id=<id_1>,id=<id_2>
```
GET /api/v2/vocabularies/terms/?format=api&ordering=id&page=20
{ "previous": "https://labid-demo.embl.de/api/v2/vocabularies/terms/?format=api&ordering=id&page=19", "next": "https://labid-demo.embl.de/api/v2/vocabularies/terms/?format=api&ordering=id&page=21", "current": 20, "total": 1774, "total_pages": 89, "results": [ { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/36b16eb3-13a0-463d-a4a1-e165044196ae/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "36b16eb3-13a0-463d-a4a1-e165044196ae" }, "created_by": { "name": "created_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "created": { "name": "created", "value": "2025-12-16T09:11:47.224740+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.224857+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "36b16eb3-13a0-463d-a4a1-e165044196ae", "name": "mating type a", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "mating type a" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "mating type a" }, "short_name": { "name": "short_name", "category": "property", "value": "mating type a" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "f2d9452b-1443-4b12-8512-0cb0ad06991c", "name": "annotations_sex", "label": "Annotations: Sex", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/36ef8a76-8911-4db3-b479-6ea73c79270e/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "36ef8a76-8911-4db3-b479-6ea73c79270e" }, "created_by": { "name": "created_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "created": { "name": "created", "value": "2025-12-16T09:24:49.325585+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:24:49.325668+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "36ef8a76-8911-4db3-b479-6ea73c79270e", "name": "PLATY_ATOKE_DiveLogSheet (PA1)", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "PLATY_ATOKE_DiveLogSheet (PA1)" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "PLATY_ATOKE_DiveLogSheet (PA1)" }, "short_name": { "name": "short_name", "category": "property", "value": "PLATY_ATOKE_DiveLogSheet (PA1)" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "a4febb06-3a43-401b-93cd-feb489320c55", "name": "trec_protocol_codes", "label": "TREC Protocol Codes", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "PA1" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/373b7c99-53fe-4fdc-9e4a-94af73fe0260/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "373b7c99-53fe-4fdc-9e4a-94af73fe0260" }, "created_by": { "name": "created_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "created": { "name": "created", "value": "2025-12-16T09:24:51.338399+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:24:51.338457+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "373b7c99-53fe-4fdc-9e4a-94af73fe0260", "name": "H360Df", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "H360Df" }, "description": { "name": "description", "category": "property", "value": "May damage the unborn child. Suspected of damaging fertility" }, "label": { "name": "label", "category": "property", "value": "H360Df (May damage the unborn child. Suspected of damaging fertility)" }, "short_name": { "name": "short_name", "category": "property", "value": "H360Df" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "600fd60d-ccd0-415b-9b5d-1fe41f16b7dc", "name": "chemical_hazard_statements", "label": "GHS hazard statements augmented with EU additions (EUH)", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/373b9199-a8c8-4d6d-9ac8-fd5e3e1b41c9/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "373b9199-a8c8-4d6d-9ac8-fd5e3e1b41c9" }, "created_by": { "name": "created_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "created": { "name": "created", "value": "2025-12-16T09:22:26.809847+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:22:26.809905+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "373b9199-a8c8-4d6d-9ac8-fd5e3e1b41c9", "name": "size fractionation", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "size fractionation" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "size fractionation" }, "short_name": { "name": "short_name", "category": "property", "value": "size fractionation" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "01a17a22-1a4a-4f0c-9f73-7bd778dab504", "name": "sample_library_selection", "label": "Sample_Library_Selection", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "size fractionation" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/37775b94-5882-43e3-806e-4c668b19c676/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "37775b94-5882-43e3-806e-4c668b19c676" }, "created_by": { "name": "created_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "created": { "name": "created", "value": "2025-12-16T09:29:02.189455+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:29:02.189520+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "37775b94-5882-43e3-806e-4c668b19c676", "name": "Bpipe", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "Bpipe" }, "description": { "name": "description", "category": "property", "value": "Bpipe pipeline system" }, "label": { "name": "label", "category": "property", "value": "Bpipe (Bpipe pipeline system)" }, "short_name": { "name": "short_name", "category": "property", "value": "Bpipe" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "dd9c5909-b0ce-4975-937f-be88fcb6bf13", "name": "computer_languages", "label": "Computer Languages", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "https://github.com/ssadedin/bpipe" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/378fd492-fd7c-4337-881c-21571e2cd280/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "378fd492-fd7c-4337-881c-21571e2cd280" }, "created_by": { "name": "created_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "created": { "name": "created", "value": "2025-12-16T09:30:46.226888+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:30:46.226946+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "378fd492-fd7c-4337-881c-21571e2cd280", "name": "AlwNI", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "AlwNI" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "AlwNI" }, "short_name": { "name": "short_name", "category": "property", "value": "AlwNI" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "9d20995e-7765-443d-aff7-d4ddef9cc44c", "name": "common_restriction_enzymes", "label": "Common_Restriction_Enzymes", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "AlwNI" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/37e36ef3-207b-41c4-853d-c672019a69d9/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "37e36ef3-207b-41c4-853d-c672019a69d9" }, "created_by": { "name": "created_by", "value": { "id": 1, "username": "admin", "full_name": 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