Term List
API endpoint that allows CV Terms to be viewed or edited.
» click to learn about Filtering, Ordering and more...
Accepted filters:
- search: Search in the following fields: ^name, ^description. (^startswith, $regex, =exact)
- id: ID (exact)
- created: Created (exact)
- modified: Modified (exact)
- name: Name starts with (istartswith)
- description: Description contains (icontains)
- autocomplete: Autocomplete filter on the name property (exact)
- owner: Owner Username (exact)
- owned_by: Filter on list of owned by group names [OR] (exact)
- public: Public (exact)
- deleted: Deleted (exact)
- deleted_by: Deleted by (exact)
- deleted_date: Deleted date (exact)
- default: Default (exact)
- category__name: Category Name (exact)
- category__id: Category ID (exact)
- created_by: Created by Username (exact)
- modified_by: Modified by Username (exact)
- dbxref_id: DBXRef ID (exact)
- category_name: Filter on category name (exact)
- category: Filter by category id (exact)
- category_id: Filter by category id (exact)
- category_id_list: Filter on list of category ids [OR] (exact)
- category_name_list: Filter on list of category names [OR] (exact)
» more..
- property: A property for which we need to retrieve the available terms, can be a name or uuid
- dependencies: a json dict that has the values for the properties the given property depends on:
{"chemical_risk_code": "R1", "<uuid>": "H1"}
- intersect: default False, Intersect on the given filter values instead of doing a "ANY" lookup
- scope(_id): (multiple) name or uuid of one or more Scopes.
- scope_tag(_id): (multiple) name or uuid of one or more Scope Tags.
Multiple scopes or scope tags are given like so: scope=Scope1&scope=Scope2
Advanced Filtering
You can also filter using a json object to process all search parameters. Currently this filter supports the syntax as produced/used by the http://summitroute.github.io/react-structured-filter/ search UI.
Example
?query={"category":"name","operator":"contains","value":"Y00"},
{"category":"amount","operator":">","value":"10"},
{"category":"type__name","operator":"exact","value":"ANTIBODY"}
» more info about the query param..
Preset mappings
- category: category__name
- deleted: <function filter_deleted at 0x7f8cbd71a440>
- deleted_by: deleted_by__username
- owner: owner__username
- owned_by: owned_by__name
- created_by: created_by__username
- modified_by: modified_by__username
Operators
- ==
- =
- >=
- >
- <=
- <
- contains
- icontains
- exact
- iexact
- startswith
- istartswith
- endswith
- iendswith
Permission filtering
Based on the current logged in user you can filter for objects that have a particular permission set:
- can_change: True/False, show objects that you can change
- can_delete: True/False, show objects that you can delete
# not applicable - will raise NotAcceptable:
- can_view: as this is always True, you can only view items you are allowed to see
Ordering
You can order on practically any field even spanning relations.
# reverse order on owner username
?ordering=-owner
# order on related field
?ordering=category__version
API endpoint that allows CV Terms to be viewed or edited.
<details>
<summary>
<i> » click to learn about Filtering, Ordering and more...</i>
</summary>
<details>
<summary> » more..</summary>
```
- property: A property for which we need to retrieve the available terms, can be a name or uuid
- dependencies: a json dict that has the values for the properties the given property depends on:
{"chemical_risk_code": "R1", "<uuid>": "H1"}
- intersect: default False, Intersect on the given filter values instead of doing a "ANY" lookup
- scope(_id): (multiple) name or uuid of one or more Scopes.
- scope_tag(_id): (multiple) name or uuid of one or more Scope Tags.
Multiple scopes or scope tags are given like so: scope=Scope1&scope=Scope2
```
</details>
</details>
None
The default modelviewset used in this project
Add JSONPatch like functionality to bulk update items.
### Bulk Delete
This view also allows for one to bulk delete items. The url needs to be appended by ``/bulk_delete/`` and the ids
need to be given by multiple query_params:
```
{current_url}/bulk_delete/?id=<id_1>,id=<id_2>
```
GET /api/v2/vocabularies/terms/?format=api&ordering=-name&page=5
{ "previous": "https://labid-demo.embl.de/api/v2/vocabularies/terms/?format=api&ordering=-name&page=4", "next": "https://labid-demo.embl.de/api/v2/vocabularies/terms/?format=api&ordering=-name&page=6", "current": 5, "total": 618, "total_pages": 124, "results": [ { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/33fed9af-4102-4174-a248-ffe4cb8e8a03/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "33fed9af-4102-4174-a248-ffe4cb8e8a03" }, "created_by": { "name": "created_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "created": { "name": "created", "value": "2025-02-18T21:41:27.933381+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-02-18T21:41:27.934921+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "33fed9af-4102-4174-a248-ffe4cb8e8a03", "name": "validation high content screen", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "validation high content screen" }, "description": { "name": "description", "category": "property", "value": "a screen to check whether the results in another screen are reproducible. Usually a different reagent targetting genes of interest are used." }, "label": { "name": "label", "category": "property", "value": "validation high content screen (a screen to check whether the results in another screen are reproducible. Usually a different reagent targetting genes of interest are used.)" }, "short_name": { "name": "short_name", "category": "property", "value": "validation high content screen" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "2212e64e-cd73-4770-afba-4b455fba7ee7", "name": "imaging_screen_types", "label": "Imaging_Screen_Types", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "EFO_0007558" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/de6c0c2b-9d6f-481b-b6fa-14c91f25f218/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "de6c0c2b-9d6f-481b-b6fa-14c91f25f218" }, "created_by": { "name": "created_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "created": { "name": "created", "value": "2025-02-18T21:41:48.237788+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-02-18T21:41:48.237791+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "de6c0c2b-9d6f-481b-b6fa-14c91f25f218", "name": "validation by reverse transcription PCR design", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "validation by reverse transcription PCR design" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "validation by reverse transcription PCR design" }, "short_name": { "name": "short_name", "category": "property", "value": "validation by reverse transcription PCR design" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "0cb3ebfc-0423-4188-b0a7-f3611ab39498", "name": "efo_study_design", "label": "Study Design", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "http://purl.obolibrary.org/obo/OBI_0001162" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/99124e7b-c4d0-4474-a025-bd61190fed54/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "99124e7b-c4d0-4474-a025-bd61190fed54" }, "created_by": { "name": "created_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "created": { "name": "created", "value": "2025-02-18T21:41:48.237832+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-02-18T21:41:48.237834+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "99124e7b-c4d0-4474-a025-bd61190fed54", "name": "validation by real time PCR design", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "validation by real time PCR design" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "validation by real time PCR design" }, "short_name": { "name": "short_name", "category": "property", "value": "validation by real time PCR design" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "0cb3ebfc-0423-4188-b0a7-f3611ab39498", "name": "efo_study_design", "label": "Study Design", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "http://purl.obolibrary.org/obo/OBI_0001166" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/dae99726-7a57-4d4f-872b-c82aa2a60d17/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "dae99726-7a57-4d4f-872b-c82aa2a60d17" }, "created_by": { "name": "created_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "created": { "name": "created", "value": "2025-02-18T21:43:56.606780+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-02-18T21:43:56.608891+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "dae99726-7a57-4d4f-872b-c82aa2a60d17", "name": "VALIDATION", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "VALIDATION" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "VALIDATION" }, "short_name": { "name": "short_name", "category": "property", "value": "VALIDATION" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "aa492c7d-4b63-4b0c-a71a-2c67aec9176f", "name": "sample_library_strategies", "label": "Sample_Library_Strategies", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "VALIDATION" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/3c913c10-5758-4388-8cd9-007d1b921459/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "3c913c10-5758-4388-8cd9-007d1b921459" }, "created_by": { "name": "created_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "created": { "name": "created", "value": "2025-02-18T21:41:20.304318+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-02-18T21:41:20.305757+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "3c913c10-5758-4388-8cd9-007d1b921459", "name": "urine", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "urine" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "urine" }, "short_name": { "name": "short_name", "category": "property", "value": "urine" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "b9133f75-a05b-4f6c-838a-30882368b5c5", "name": "annotations_sampletype", "label": "Annotations: SampleType", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } } ] }