Term List
API endpoint that allows CV Terms to be viewed or edited.
» click to learn about Filtering, Ordering and more...
Accepted filters:
- search: Search in the following fields: ^name, ^description. (^startswith, $regex, =exact)
- id: ID (exact)
- created: Created (exact)
- modified: Modified (exact)
- name: Name starts with (istartswith)
- description: Description contains (icontains)
- autocomplete: Autocomplete filter on the name property (exact)
- owner: Owner Username (exact)
- owned_by: Filter on list of owned by group names [OR] (exact)
- public: Public (exact)
- deleted: Deleted (exact)
- deleted_by: Deleted by (exact)
- deleted_date: Deleted date (exact)
- default: Default (exact)
- category__name: Category Name (exact)
- category__id: Category ID (exact)
- created_by: Created by Username (exact)
- modified_by: Modified by Username (exact)
- dbxref_id: DBXRef ID (exact)
- category_name: Filter on category name (exact)
- category: Filter by category id (exact)
- category_id: Filter by category id (exact)
- category_id_list: Filter on list of category ids [OR] (exact)
- category_name_list: Filter on list of category names [OR] (exact)
» more..
- property: A property for which we need to retrieve the available terms, can be a name or uuid
- dependencies: a json dict that has the values for the properties the given property depends on:
{"chemical_risk_code": "R1", "<uuid>": "H1"}
- intersect: default False, Intersect on the given filter values instead of doing a "ANY" lookup
- scope(_id): (multiple) name or uuid of one or more Scopes.
- scope_tag(_id): (multiple) name or uuid of one or more Scope Tags.
Multiple scopes or scope tags are given like so: scope=Scope1&scope=Scope2
Advanced Filtering
You can also filter using a json object to process all search parameters. Currently this filter supports the syntax as produced/used by the http://summitroute.github.io/react-structured-filter/ search UI.
Example
?query={"category":"name","operator":"contains","value":"Y00"},
{"category":"amount","operator":">","value":"10"},
{"category":"type__name","operator":"exact","value":"ANTIBODY"}
» more info about the query param..
Preset mappings
- category: category__name
- deleted: <function filter_deleted at 0x7f8cbd712440>
- deleted_by: deleted_by__username
- owner: owner__username
- owned_by: owned_by__name
- created_by: created_by__username
- modified_by: modified_by__username
Operators
- ==
- =
- >=
- >
- <=
- <
- contains
- icontains
- exact
- iexact
- startswith
- istartswith
- endswith
- iendswith
Permission filtering
Based on the current logged in user you can filter for objects that have a particular permission set:
- can_change: True/False, show objects that you can change
- can_delete: True/False, show objects that you can delete
# not applicable - will raise NotAcceptable:
- can_view: as this is always True, you can only view items you are allowed to see
Ordering
You can order on practically any field even spanning relations.
# reverse order on owner username
?ordering=-owner
# order on related field
?ordering=category__version
API endpoint that allows CV Terms to be viewed or edited.
<details>
<summary>
<i> » click to learn about Filtering, Ordering and more...</i>
</summary>
<details>
<summary> » more..</summary>
```
- property: A property for which we need to retrieve the available terms, can be a name or uuid
- dependencies: a json dict that has the values for the properties the given property depends on:
{"chemical_risk_code": "R1", "<uuid>": "H1"}
- intersect: default False, Intersect on the given filter values instead of doing a "ANY" lookup
- scope(_id): (multiple) name or uuid of one or more Scopes.
- scope_tag(_id): (multiple) name or uuid of one or more Scope Tags.
Multiple scopes or scope tags are given like so: scope=Scope1&scope=Scope2
```
</details>
</details>
None
The default modelviewset used in this project
Add JSONPatch like functionality to bulk update items.
### Bulk Delete
This view also allows for one to bulk delete items. The url needs to be appended by ``/bulk_delete/`` and the ids
need to be given by multiple query_params:
```
{current_url}/bulk_delete/?id=<id_1>,id=<id_2>
```
GET /api/v2/vocabularies/terms/?format=api&ordering=-name&page=123
{ "previous": "https://labid-demo.embl.de/api/v2/vocabularies/terms/?format=api&ordering=-name&page=122", "next": "https://labid-demo.embl.de/api/v2/vocabularies/terms/?format=api&ordering=-name&page=124", "current": 123, "total": 618, "total_pages": 124, "results": [ { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/8f5f300e-f862-4b96-9e32-0ad5447eca35/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "8f5f300e-f862-4b96-9e32-0ad5447eca35" }, "created_by": { "name": "created_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "created": { "name": "created", "value": "2025-02-18T21:43:58.222431+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-02-18T21:43:58.224041+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "8f5f300e-f862-4b96-9e32-0ad5447eca35", "name": "10x 3' transcription profiling", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "10x 3' transcription profiling" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "10x 3' transcription profiling" }, "short_name": { "name": "short_name", "category": "property", "value": "10x 3' transcription profiling" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "4ddcc401-7bee-4890-99e7-65ad90ef2f25", "name": "sample_single_cell_library_constructions", "label": "Sample_Single_Cell_Library_Constructions", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "EFO_0030003" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/f201197d-65f5-49c1-9fe6-d4e4210d1f1f/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "f201197d-65f5-49c1-9fe6-d4e4210d1f1f" }, "created_by": { "name": "created_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "created": { "name": "created", "value": "2025-02-18T21:44:00.495071+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-02-18T21:44:00.496701+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "f201197d-65f5-49c1-9fe6-d4e4210d1f1f", "name": "10X", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "10X" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "10X" }, "short_name": { "name": "short_name", "category": "property", "value": "10X" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "9862f001-20f7-4812-af98-28778ddbfb6e", "name": "sample_single_cell_isolations", "label": "Sample_Single_Cell_Isolations", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "10X" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/7813d14b-e908-4f62-9bda-d97fa9b13262/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "7813d14b-e908-4f62-9bda-d97fa9b13262" }, "created_by": { "name": "created_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "created": { "name": "created", "value": "2025-02-18T21:41:26.607433+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-02-18T21:41:26.608930+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "7813d14b-e908-4f62-9bda-d97fa9b13262", "name": "10B", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "10B" }, "description": { "name": "description", "category": "property", "value": "Fluorescent Protein; Ex/Em max: / nm" }, "label": { "name": "label", "category": "property", "value": "10B (Fluorescent Protein; Ex/Em max: / nm)" }, "short_name": { "name": "short_name", "category": "property", "value": "10B" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "edb05799-6411-4ab6-b621-26f1097b3b92", "name": "imaging_channel_labels", "label": "Imaging_Channel_Labels", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "https://www.fpbase.org/table/" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/3004ddc0-232e-4107-9ee2-a55ddfbf227e/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "3004ddc0-232e-4107-9ee2-a55ddfbf227e" }, "created_by": { "name": "created_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "created": { "name": "created", "value": "2025-02-18T21:41:59.889277+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-02-18T21:41:59.891087+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "3004ddc0-232e-4107-9ee2-a55ddfbf227e", "name": "1", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "1" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "1" }, "short_name": { "name": "short_name", "category": "property", "value": "1" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "e16b30f1-c670-460b-af96-07f7bf20c034", "name": "virus_serotypes", "label": "Virus serotypes", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/terms/aadcb78b-3598-4ad8-9360-87c7505e830c/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "aadcb78b-3598-4ad8-9360-87c7505e830c" }, "created_by": { "name": "created_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "created": { "name": "created", "value": "2025-02-18T21:41:23.236567+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-02-18T21:41:23.238280+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "term" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "aadcb78b-3598-4ad8-9360-87c7505e830c", "name": "0.6/1.0", "model_name": "term", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "0.6/1.0" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "0.6/1.0" }, "short_name": { "name": "short_name", "category": "property", "value": "0.6/1.0" }, "image_url": { "name": "image_url", "category": "property", "value": "" }, "category": { "name": "category", "value": { "id": "a797a3c1-a251-4d48-871c-afc5c2bf9952", "name": "em_grid_hole_geometry", "label": "Hole Geometry", "deleted": false, "model_name": "category", "app_name": "vocabularies", "model_type": "DEFAULT" }, "category": "property" }, "dbxref_id": { "name": "dbxref_id", "category": "property", "value": "stocks-gbcs" }, "default": { "name": "default", "category": "property", "value": false }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 2, "username": "admin", "full_name": "admin" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } } ] }