Category List
API endpoint that allows CV Categories to be viewed or edited. In addition to the normal detail page, when provided with the param nested=True, the detail endpoint shows all Terms on the category. Then on the detail page, terms can be viewed, changed, deleted and added to the Category.
» click to learn about Filtering, Ordering and more...
Accepted filters:
- search: Search in the following fields: ^name. (^startswith, $regex, =exact)
- id: ID (exact)
- created: Created (exact)
- modified: Modified (exact)
- name: Name starts with (istartswith)
- description: Description contains (icontains)
- query: Search filter on the name property (exact)
- owner: Owner Username (exact)
- owned_by: Filter on list of owned by group names [OR] (exact)
- public: Public (exact)
- deleted: Deleted (exact)
- deleted_by: Deleted by (exact)
- deleted_date: Deleted date (exact)
- label: Label contains (icontains)
- created_by: Created by Username (exact)
- modified_by: Modified by Username (exact)
Advanced Filtering
You can also filter using a json object to process all search parameters. Currently this filter supports the syntax as produced/used by the http://summitroute.github.io/react-structured-filter/ search UI.
Example
?query_expression={"category":"name","operator":"contains","value":"Y00"},
{"category":"amount","operator":">","value":"10"},
{"category":"type__name","operator":"exact","value":"ANTIBODY"}
» more info about the query_expression param..
Preset mappings
- terms: {'name': 'term_count', 'aggregate': Count(F(terms), distinct=True)}
- deleted: <function filter_deleted at 0x7f45063b6710>
- deleted_by: deleted_by__username
- owner: owner__username
- owned_by: owned_by__name
- created_by: created_by__username
- modified_by: modified_by__username
Operators
- ==
- =
- >=
- >
- <=
- <
- contains
- icontains
- exact
- iexact
- startswith
- istartswith
- endswith
- iendswith
Permission filtering
Based on the current logged in user you can filter for objects that have a particular permission set:
- can_change: True/False, show objects that you can change
- can_delete: True/False, show objects that you can delete
# not applicable - will raise NotAcceptable:
- can_view: as this is always True, you can only view items you are allowed to see
Ordering
You can order on practically any field even spanning relations.
# reverse order on owner username
?ordering=-owner
# order on related field
?ordering=category__version
API endpoint that allows CV Categories to be viewed or edited.
In addition to the normal detail page, when provided with the param *nested*=True,
the detail endpoint shows all Terms on the category.
Then on the detail page, terms can be viewed, changed, deleted and added to the Category.
None
The default modelviewset used in this project
Add JSONPatch like functionality to bulk update items.
### Bulk Delete
This view also allows for one to bulk delete items. The url needs to be appended by ``/bulk_delete/`` and the ids
need to be given by multiple query_params:
```
{current_url}/bulk_delete/?id=<id_1>,id=<id_2>
```
GET /api/v2/vocabularies/categories/?format=api&ordering=-id
{ "previous": null, "next": "https://labid-demo.embl.de/api/v2/vocabularies/categories/?format=api&ordering=-id&page=2", "current": 1, "total": 85, "total_pages": 5, "results": [ { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/categories/fb86ec26-ea96-4b26-af11-b750e04abd96/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "fb86ec26-ea96-4b26-af11-b750e04abd96" }, "created_by": { "name": "created_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "created": { "name": "created", "value": "2025-12-16T09:31:46.454078+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:31:46.454133+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "category" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "fb86ec26-ea96-4b26-af11-b750e04abd96", "name": "transmission_em_tem_type", "model_name": "category", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "transmission_em_tem_type" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "TEM Type" }, "status": { "name": "status", "value": { "value": "ACTIVE", "label": "Active" }, "category": "property" }, "source": { "name": "source", "category": "property", "value": "gbcs" }, "version": { "name": "version", "category": "property", "value": "1" }, "terms": { "name": "terms", "category": "property", "value": [ { "id": "645123e2-86c8-47d8-b746-78822931aad6", "name": "Tomography", "description": "", "dbxref_id": "Tomography", "default": false, "short_name": "Tomography", "image_url": "", "public": true }, { "id": "a89b9a38-8dba-4541-be86-d08b492b7c02", "name": "Single Particle", "description": "", "dbxref_id": "Single Particle", "default": true, "short_name": "Single Particle", "image_url": "", "public": true } ] }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/categories/f5b9d3b9-3691-435f-83b3-1398831b619e/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "f5b9d3b9-3691-435f-83b3-1398831b619e" }, "created_by": { "name": "created_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "created": { "name": "created", "value": "2025-12-16T09:12:19.134988+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:12:19.135073+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "category" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "f5b9d3b9-3691-435f-83b3-1398831b619e", "name": "risk_groups", "model_name": "category", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "risk_groups" }, "description": { "name": "description", "category": "property", "value": "Biological agents are categorized in Risk Groups (RG) based on their relative risk. Depending on the country or organization, this classification system might take the following factors into consideration: Pathogenicity of the organism, Mode of transmission and host range, Availability of effective preventive measures (e.g., vaccines), Availability of effective treatment (e.g., antibiotics). It is important to understand that biological agents are classified in a graded fashion such that the level of hazard associated with RG1 being the lowest and RG4 being the highest." }, "label": { "name": "label", "category": "property", "value": "Risk Groups (biohazard)" }, "status": { "name": "status", "value": { "value": "ACTIVE", "label": "Active" }, "category": "property" }, "source": { "name": "source", "category": "property", "value": "http://ehs.virginia.edu/biosafety/bio.riskgroups.html (Apr 26 2016)" }, "version": { "name": "version", "category": "property", "value": "1.0" }, "terms": { "name": "terms", "category": "property", "value": [ { "id": "eb550a45-d94e-435c-90ec-f2e06a08278c", "name": "RG4", "description": "Biological agent that are associated with lethal human disease for which preventative or therapeutics are not readily available", "dbxref_id": "", "default": false, "short_name": "RG4", "image_url": "", "public": true }, { "id": "0e39993f-a523-4d76-af61-07871810a533", "name": "RG3", "description": "Biological agent that are associated with serious or lethal human disease for which preventative or therapeutics may be available", "dbxref_id": "", "default": false, "short_name": "RG3", "image_url": "", "public": true }, { "id": "260d72b7-27ce-4d5c-9658-2e289829f1f9", "name": "RG2", "description": "Biological agent that are associated with disease which is rarely serious and for which preventative or therapeutics is often available", "dbxref_id": "", "default": false, "short_name": "RG2", "image_url": "", "public": true }, { "id": "e46b6a63-2539-4d86-bbb1-5b662fae7c29", "name": "RG1", "description": "Biological agent that are not associated with disease in healthy adult humans or animals", "dbxref_id": "", "default": false, "short_name": "RG1", "image_url": "", "public": true } ] }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/categories/f2e3ee3b-f454-4e35-81c7-357e7524b45e/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "f2e3ee3b-f454-4e35-81c7-357e7524b45e" }, "created_by": { "name": "created_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "created": { "name": "created", "value": "2025-12-16T09:22:50.716220+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:22:50.716288+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "category" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "f2e3ee3b-f454-4e35-81c7-357e7524b45e", "name": "em_grid_base_material", "model_name": "category", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "em_grid_base_material" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "Base Material" }, "status": { "name": "status", "value": { "value": "ACTIVE", "label": "Active" }, "category": "property" }, "source": { "name": "source", "category": "property", "value": "GBCS" }, "version": { "name": "version", "category": "property", "value": "1" }, "terms": { "name": "terms", "category": "property", "value": [ { "id": "e2950cce-aa0f-4f53-b1e2-43f3341ca00a", "name": "Copper", "description": "", "dbxref_id": "stocks-gbcs", "default": false, "short_name": "Copper", "image_url": "", "public": true }, { "id": "4726227b-c198-44cb-b605-b97d2cae0e56", "name": "Gold", "description": "", "dbxref_id": "stocks-gbcs", "default": false, "short_name": "Gold", "image_url": "", "public": true }, { "id": "0fc04c5c-871c-4d13-a34a-6a36283d7ef8", "name": "Titanium", "description": "", "dbxref_id": "stocks-gbcs", "default": false, "short_name": "Titanium", "image_url": "", "public": true }, { "id": "9d6b227e-7e91-4c62-a1a5-c24a0aec5e7d", "name": "Molibdenum", "description": "", "dbxref_id": "stocks-gbcs", "default": false, "short_name": "Molibdenum", "image_url": "", "public": true }, { "id": "87738cf9-e138-4d24-b4f9-875697e7f965", "name": "Nickel", "description": "", "dbxref_id": "stocks-gbcs", "default": false, "short_name": "Nickel", "image_url": "", "public": true } ] }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/categories/f2d9452b-1443-4b12-8512-0cb0ad06991c/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "f2d9452b-1443-4b12-8512-0cb0ad06991c" }, "created_by": { "name": "created_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "created": { "name": "created", "value": "2025-12-16T09:11:47.207005+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:11:47.207069+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "category" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "f2d9452b-1443-4b12-8512-0cb0ad06991c", "name": "annotations_sex", "model_name": "category", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "annotations_sex" }, "description": { "name": "description", "category": "property", "value": "" }, "label": { "name": "label", "category": "property", "value": "Annotations: Sex" }, "status": { "name": "status", "value": { "value": "ACTIVE", "label": "Active" }, "category": "property" }, "source": { "name": "source", "category": "property", "value": "" }, "version": { "name": "version", "category": "property", "value": "1" }, "terms": { "name": "terms", "category": "property", "value": [ { "id": "b4e91ef4-f809-46a5-a34b-3917991a52d1", "name": "female", "description": "", "dbxref_id": "", "default": false, "short_name": "female", "image_url": "", "public": true }, { "id": "4d963ebe-763a-4225-adfd-bd2a7b06e864", "name": "male", "description": "", "dbxref_id": "", "default": false, "short_name": "male", "image_url": "", "public": true }, { "id": "eb5ea2df-43d8-485b-a330-512d4aaaf072", "name": "Hfr", "description": "", "dbxref_id": "", "default": false, "short_name": "Hfr", "image_url": "", "public": true }, { "id": "a6efaa68-f52c-4e34-8186-a13e9609b1d4", "name": "hermaphrodite", "description": "", "dbxref_id": "", "default": false, "short_name": "hermaphrodite", "image_url": "", "public": true }, { "id": "d0f26365-4419-43e9-a03a-4b2fa73b4dbe", "name": "F minus", "description": "", "dbxref_id": "", "default": false, "short_name": "F minus", "image_url": "", "public": true }, { "id": "36b16eb3-13a0-463d-a4a1-e165044196ae", "name": "mating type a", "description": "", "dbxref_id": "", "default": false, "short_name": "mating type a", "image_url": "", "public": true }, { "id": "03784a17-b915-4d27-bbb4-f6831b2296c1", "name": "mating type alpha", "description": "", "dbxref_id": "", "default": false, "short_name": "mating type alpha", "image_url": "", "public": true }, { "id": "847f86f4-e9f8-40ab-8123-7bc6d9b7ecb2", "name": "mating type h minus", "description": "", "dbxref_id": "", "default": false, "short_name": "mating type h minus", "image_url": "", "public": true }, { "id": "8fabd676-1fa8-4dc4-a953-d46f64300c32", "name": "mating type h plus", "description": "", "dbxref_id": "", "default": false, "short_name": "mating type h plus", "image_url": "", "public": true }, { "id": "00f8fa7f-706f-4951-b881-0386f22b00c4", "name": "mixed sex", "description": "", "dbxref_id": "", "default": false, "short_name": "mixed sex", "image_url": "", "public": true }, { "id": "0d2395d6-9f8d-4af5-b139-2b9f5eb9b157", "name": "unknown sex", "description": "", "dbxref_id": "", "default": false, "short_name": "unknown sex", "image_url": "", "public": true } ] }, "permissions": { "name": "permissions", "value": { "public": true, "actions": {}, "allowed": [ "view" ] }, "category": "property" }, "public": { "name": "public", "value": true, "category": "property" }, "owner": { "name": "owner", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "owned_by": { "name": "owned_by", "value": { "id": 1, "name": "SYSTEM_GROUP" }, "category": "property" } }, { "url": { "name": "url", "value": "https://labid-demo.embl.de/api/v2/vocabularies/categories/f2a133d8-23ef-4c7b-8c97-bb4a46c0a1ae/?format=api", "category": "property" }, "id": { "name": "id", "category": "property", "value": "f2a133d8-23ef-4c7b-8c97-bb4a46c0a1ae" }, "created_by": { "name": "created_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "modified_by": { "name": "modified_by", "value": { "id": 1, "username": "admin", "full_name": "Admin User" }, "category": "property" }, "created": { "name": "created", "value": "2025-12-16T09:14:24.322724+01:00", "category": "property" }, "modified": { "name": "modified", "value": "2025-12-16T09:14:24.322813+01:00", "category": "property" }, "model_name": { "name": "model_name", "category": "property", "value": "category" }, "app_name": { "name": "app_name", "category": "property", "value": "vocabularies" }, "model_type": { "name": "model_type", "category": "property", "value": "DEFAULT" }, "name": { "name": "name", "value": { "id": "f2a133d8-23ef-4c7b-8c97-bb4a46c0a1ae", "name": "material_types", "model_name": "category", "app_name": "vocabularies", "model_type": null }, "category": "property" }, "choice_label": { "name": "choice_label", "category": "property", "value": "material_types" }, "description": { "name": "description", "category": "property", "value": "Material types from ENA" }, "label": { "name": "label", "category": "property", "value": "Material_Types" }, "status": { "name": "status", "value": { "value": "ACTIVE", "label": "Active" }, "category": "property" }, "source": { "name": "source", "category": "property", "value": "" }, "version": { "name": "version", "category": "property", "value": "1.0" }, "terms": { "name": "terms", "category": "property", "value": [ { "id": "d8372a8e-baec-4348-80c3-d6ae14759bbd", "name": "whole organism", "description": "Whole Organism", "dbxref_id": "whole organism", "default": false, "short_name": "whole organism", "image_url": "", "public": true }, { "id": "6d1752e0-4cd0-44f0-8fcf-b21a8f5b5679", "name": "virus", "description": "Virus", "dbxref_id": "virus", "default": false, "short_name": "virus", "image_url": "", "public": true }, { "id": "0fd3c41a-f746-4068-b475-96625ce4af8c", "name": "total RNA", "description": "Total RNA", "dbxref_id": "total RNA", "default": false, "short_name": "total RNA", "image_url": "", "public": true }, { "id": "ec579f4a-b362-40ad-98f6-43df845cd9ad", "name": "synthetic RNA", "description": "Synthetic RNA", "dbxref_id": "synthetic RNA", "default": false, "short_name": "synthetic RNA", "image_url": "", "public": true }, { "id": "752789aa-f186-49dc-8fec-05622af55ec5", "name": "synthetic DNA", "description": "Synthetic DNA", "dbxref_id": "synthetic DNA", "default": false, "short_name": "synthetic DNA", "image_url": "", "public": true }, { "id": "511cfb69-2c3c-41d5-a1e4-cb16b20d1156", "name": "protein", "description": "Protein", "dbxref_id": "protein", "default": false, "short_name": "protein", "image_url": "", "public": true }, { "id": "53e4ad95-1c6c-4215-8325-52ed38937c6c", "name": "polyA RNA", "description": "PolyA RNA", "dbxref_id": "polyA RNA", 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